IL_6FTJ_019
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6FTJ|1|u|G|409, 6FTJ|1|u|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_019 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1422
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6FTJ|1|u|G|387
6FTJ|1|u|A|388
6FTJ|1|u|A|389
6FTJ|1|u|C|390
*
6FTJ|1|u|G|401
6FTJ|1|u|A|402
6FTJ|1|u|G|403
6FTJ|1|u|U|404
6FTJ|1|u|U|405
6FTJ|1|u|C|406
6FTJ|1|u|A|407
6FTJ|1|u|A|408
6FTJ|1|u|G|409
6FTJ|1|u|A|410
6FTJ|1|u|G|411
6FTJ|1|u|G|412
6FTJ|1|u|G|413
6FTJ|1|u|C|414
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain P
- uL22
- Chain Y
- Ribosomal protein L26
- Chain l
- eL39
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain x
- Protein transport protein Sec61 subunit alpha isoform 1
Coloring options: