IL_6FTJ_020
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_020 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.058
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6FTJ|1|u|G|415
6FTJ|1|u|U|416
6FTJ|1|u|G|417
6FTJ|1|u|A|418
6FTJ|1|u|A|419
6FTJ|1|u|A|420
6FTJ|1|u|C|421
*
6FTJ|1|w|G|13
6FTJ|1|w|U|14
6FTJ|1|w|G|15
6FTJ|1|w|G|16
6FTJ|1|w|A|17
6FTJ|1|w|U|18
6FTJ|1|w|C|19
Current chains
- Chain u
- 28S rRNA
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain P
- uL22
- Chain e
- eL32
Coloring options: