IL_6FTJ_031

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

6FTJ|1|u|U|513, 6FTJ|1|u|U|514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_031 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2362

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6FTJ|1|u|C|511
6FTJ|1|u|U|512
6FTJ|1|u|U|513
6FTJ|1|u|U|514
6FTJ|1|u|C|515
*
6FTJ|1|u|G|646
6FTJ|1|u|G|647
6FTJ|1|u|G|648

Current chains

Chain u

28S rRNA

Nearby chains

Chain L

eL13

Chain a

uL15