3D structure

PDB id
6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTJ_050 not in the Motif Atlas
Geometric match to IL_4WF9_087
Geometric discrepancy: 0.1315
The information below is about IL_4WF9_087
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
44

Unit IDs

6FTJ|1|u|C|1431
6FTJ|1|u|G|1432
6FTJ|1|u|A|1433
6FTJ|1|u|G|1434
*
6FTJ|1|u|C|1450
6FTJ|1|u|G|1451
6FTJ|1|u|A|1452
6FTJ|1|u|G|1453

Current chains

Chain u
28S rRNA

Nearby chains

Chain Q
uL14

Coloring options:


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