IL_6FTJ_071

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

ACU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_071 not in the Motif Atlas

Homologous match to IL_5TBW_046

Geometric discrepancy: 0.1876

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FTJ|1|u|A|1858
6FTJ|1|u|C|1859
6FTJ|1|u|U|1860
*
6FTJ|1|u|A|1874
6FTJ|1|u|C|1875
6FTJ|1|u|U|1876

Current chains

Chain u

28S rRNA

Nearby chains

Chain F

Ul30

Chain b

60S ribosomal protein L29

Chain v

5S ribosomal RNA; 5S rRNA