IL_6FTJ_075

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

6FTJ|1|u|G|1919

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_075 not in the Motif Atlas

Homologous match to IL_8GLP_077

Geometric discrepancy: 0.1195

The information below is about IL_8GLP_077

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

6FTJ|1|u|U|1918
6FTJ|1|u|G|1919
6FTJ|1|u|C|1920
*
6FTJ|1|u|G|2063
6FTJ|1|u|G|2064

Current chains

Chain u

28S rRNA

Nearby chains

Chain F

Ul30

Chain M

Ribosomal protein L14

Chain O

uL13

Chain S

eL20

Chain f

eL33