IL_6FTJ_081

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6FTJ|1|u|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_081 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4822

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6FTJ|1|u|G|1973
6FTJ|1|u|U|1974
6FTJ|1|u|G|1975
6FTJ|1|u|G|1976
6FTJ|1|u|C|1977
*
6FTJ|1|u|G|1989
6FTJ|1|u|A|1990
6FTJ|1|u|A|1991
6FTJ|1|u|U|1992
6FTJ|1|u|C|1993

Current chains

Chain u

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain s

60S acidic ribosomal protein P0

Chain t

Ribosomal protein L12