IL_6FTJ_089
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGAAC*GAA
- Length
- 8 nucleotides
- Bulged bases
- 6FTJ|1|u|A|2428
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_089 not in the Motif Atlas
- Geometric match to IL_7A0S_047
- Geometric discrepancy: 0.1995
- The information below is about IL_7A0S_047
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_06671.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
6FTJ|1|u|U|2415
6FTJ|1|u|G|2416
6FTJ|1|u|A|2417
6FTJ|1|u|A|2418
6FTJ|1|u|C|2419
*
6FTJ|1|u|G|2427
6FTJ|1|u|A|2428
6FTJ|1|u|A|2429
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain P
- uL22
- Chain R
- eL19
- Chain l
- eL39
- Chain x
- Protein transport protein Sec61 subunit alpha isoform 1
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