IL_6FTJ_092

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_092 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2601

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6FTJ|1|u|G|2542
6FTJ|1|u|A|2543
6FTJ|1|u|G|2544
6FTJ|1|u|U|2545
6FTJ|1|u|G|2546
6FTJ|1|u|G|2547
*
6FTJ|1|u|C|2772
6FTJ|1|u|G|2773
6FTJ|1|u|C|2774

Current chains

Chain u

28S rRNA

Nearby chains

Chain k

eL38

Chain w

5.8S ribosomal RNA; 5.8S rRNA