IL_6FTJ_114

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

6FTJ|1|u|A|3711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_114 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.2594

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6FTJ|1|u|G|3710
6FTJ|1|u|A|3711
6FTJ|1|u|A|3712
6FTJ|1|u|U|3713
6FTJ|1|u|G|3714
*
6FTJ|1|u|C|3739
6FTJ|1|u|G|3740
6FTJ|1|u|C|3741

Current chains

Chain u

28S rRNA

Nearby chains