IL_6FTJ_122

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6FTJ|1|u|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_122 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0674

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6FTJ|1|u|G|3916
6FTJ|1|u|A|3917
*
6FTJ|1|u|U|4384
6FTJ|1|u|A|4385
6FTJ|1|u|C|4386
6FTJ|1|u|C|4387

Current chains

Chain u

28S rRNA

Nearby chains

Chain A

uL2