IL_6FTJ_128

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6FTJ|1|u|A|4292

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_128 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.2966

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6FTJ|1|u|G|4291
6FTJ|1|u|A|4292
6FTJ|1|u|U|4293
*
6FTJ|1|u|A|4317
6FTJ|1|u|C|4318

Current chains

Chain u

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L29

Chain o

eL42