3D structure

PDB id
6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
6FTJ|1|u|A|4548
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTJ_143 not in the Motif Atlas
Geometric match to IL_7RQB_101
Geometric discrepancy: 0.213
The information below is about IL_7RQB_101
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6FTJ|1|u|C|4537
6FTJ|1|u|G|4538
*
6FTJ|1|u|C|4547
6FTJ|1|u|A|4548
6FTJ|1|u|G|4549

Current chains

Chain u
28S rRNA

Nearby chains

Chain A
uL2

Coloring options:


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