IL_6FTJ_145

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6FTJ|1|u|C|4720

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_145 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3002

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6FTJ|1|u|C|4582
6FTJ|1|u|C|4583
6FTJ|1|u|A|4584
6FTJ|1|u|U|4585
*
6FTJ|1|u|A|4717
6FTJ|1|u|G|4718
6FTJ|1|u|G|4719
6FTJ|1|u|C|4720
6FTJ|1|u|G|4721

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13