IL_6FTJ_173

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_173 not in the Motif Atlas

Geometric match to IL_7RQB_015

Geometric discrepancy: 0.2054

The information below is about IL_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

6FTJ|1|v|U|79
6FTJ|1|v|U|80
6FTJ|1|v|G|81
*
6FTJ|1|v|C|95
6FTJ|1|v|U|96
6FTJ|1|v|G|97

Current chains

Chain v

5S ribosomal RNA

Nearby chains

Chain F

Ul30

Chain S

eL20

Chain u

Large subunit ribosomal RNA; LSU rRNA