IL_6FTJ_176

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

6FTJ|1|u|G|119, 6FTJ|1|u|U|150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTJ|1|u|C|118
6FTJ|1|u|G|119
6FTJ|1|u|A|120
6FTJ|1|u|A|121
6FTJ|1|u|U|122
*
6FTJ|1|u|A|147
6FTJ|1|u|C|148
6FTJ|1|u|A|149
6FTJ|1|u|U|150
6FTJ|1|u|G|151
6FTJ|1|u|U|152
6FTJ|1|u|G|153

Current chains

Chain u

28S rRNA

Nearby chains

Chain G

uL8

Chain N

Ribosomal protein L15

Chain h

uL29

Chain w

5.8S ribosomal RNA; 5.8S rRNA