IL_6FTJ_185
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_185 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.0663
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6FTJ|1|u|C|4466
6FTJ|1|u|A|4467
6FTJ|1|u|U|4468
6FTJ|1|u|U|4469
6FTJ|1|u|G|4470
*
6FTJ|1|u|C|4485
6FTJ|1|u|C|4486
6FTJ|1|u|A|4487
6FTJ|1|u|A|4488
6FTJ|1|u|G|4489
6FTJ|1|u|C|4490
6FTJ|1|u|G|4491
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain O
- uL13
- Chain V
- uL14
- Chain m
- eL40
Coloring options: