IL_6FYX_023

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6FYX|1|2|U|319, 6FYX|1|2|C|320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYX_023 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2221

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6FYX|1|2|U|317
6FYX|1|2|U|318
6FYX|1|2|U|319
6FYX|1|2|C|320
6FYX|1|2|G|321
6FYX|1|2|A|322
*
6FYX|1|2|U|344
6FYX|1|2|G|345

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p

Chain q

eIF3c,eIF3c