IL_6FYX_040

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUAACCUGUA*UGCAGGCGAAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYX|1|2|G|703
6FYX|1|2|C|704
6FYX|1|2|U|705
6FYX|1|2|A|706
6FYX|1|2|A|707
6FYX|1|2|C|708
6FYX|1|2|C|709
6FYX|1|2|U|710
6FYX|1|2|G|711
6FYX|1|2|U|712
6FYX|1|2|A|713
*
6FYX|1|2|U|725
6FYX|1|2|G|726
6FYX|1|2|C|727
6FYX|1|2|A|728
6FYX|1|2|G|729
6FYX|1|2|G|730
6FYX|1|2|C|731
6FYX|1|2|G|732
6FYX|1|2|A|733
6FYX|1|2|A|734
6FYX|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6