IL_6FYX_044

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYX_044 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2284

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6FYX|1|2|U|821
6FYX|1|2|G|822
6FYX|1|2|G|823
6FYX|1|2|U|824
*
6FYX|1|2|A|846
6FYX|1|2|C|847
6FYX|1|2|C|848
6FYX|1|2|A|849

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

KLLA0A10483p