IL_6FYX_050

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6FYX|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYX_050 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2503

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6FYX|1|2|U|892
6FYX|1|2|U|893
6FYX|1|2|G|894
6FYX|1|2|U|895
6FYX|1|2|C|896
6FYX|1|2|A|897
6FYX|1|2|G|898
*
6FYX|1|2|C|909
6FYX|1|2|U|910
6FYX|1|2|U|911
6FYX|1|2|G|912
6FYX|1|2|G|913
6FYX|1|2|A|914
6FYX|1|2|U|915
6FYX|1|2|U|916
6FYX|1|2|U|917
6FYX|1|2|A|918

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1

Chain O

40S ribosomal protein S14

Chain j

Eukaryotic translation initiation factor 2 subunit alpha