IL_6FYX_070

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

U(PSU)GG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYX_070 not in the Motif Atlas

Geometric match to IL_361D_001

Geometric discrepancy: 0.3527

The information below is about IL_361D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6FYX|1|2|U|1288
6FYX|1|2|PSU|1289
6FYX|1|2|G|1290
6FYX|1|2|G|1291
*
6FYX|1|2|C|1322
6FYX|1|2|G|1323
6FYX|1|2|A|1324
6FYX|1|2|A|1325

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0

Chain C

KLLA0F09812p

Chain D

KLLA0D08305p

Chain R

KLLA0B01474p