IL_6FYX_079

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYX_079 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1154

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6FYX|1|2|G|1538
6FYX|1|2|G|1539
6FYX|1|2|G|1540
6FYX|1|2|A|1541
6FYX|1|2|U|1542
6FYX|1|2|A|1543
*
6FYX|1|2|U|1564
6FYX|1|2|U|1565
6FYX|1|2|C|1566
6FYX|1|2|A|1567
6FYX|1|2|A|1568
6FYX|1|2|C|1569

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p