IL_6FYX_099
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCAUG*UGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6FYX|1|2|C|1273, 6FYX|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYX_099 not in the Motif Atlas
- Geometric match to IL_6CZR_365
- Geometric discrepancy: 0.2155
- The information below is about IL_6CZR_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45699.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6FYX|1|2|U|1271
6FYX|1|2|G|1272
6FYX|1|2|C|1273
6FYX|1|2|A|1274
6FYX|1|2|U|1275
6FYX|1|2|G|1276
*
6FYX|1|2|U|1432
6FYX|1|2|G|1433
6FYX|1|2|A|1434
6FYX|1|2|U|1435
6FYX|1|2|G|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (31-MER)
- Chain D
- KLLA0D08305p
- Chain K
- KLLA0B08173p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
- Chain i
- Eukaryotic translation initiation factor 1A
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