IL_6FYX_101

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

6FYX|1|2|G|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYX_101 not in the Motif Atlas

Homologous match to IL_9PN5_207

Geometric discrepancy: 0.1665

The information below is about IL_9PN5_207

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

6FYX|1|2|U|1275
6FYX|1|2|G|1276
*
6FYX|1|2|U|1432
6FYX|1|2|G|1433
6FYX|1|2|A|1434

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain K

KLLA0B08173p

Chain U

KLLA0F25542p

Chain d

40S ribosomal protein S29