IL_6FYX_105

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAGGAU*AGAAUCUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYX|1|2|C|1673
6FYX|1|2|U|1674
6FYX|1|2|C|1675
6FYX|1|2|A|1676
6FYX|1|2|G|1677
6FYX|1|2|G|1678
6FYX|1|2|A|1679
6FYX|1|2|U|1680
*
6FYX|1|2|A|1717
6FYX|1|2|G|1718
6FYX|1|2|A|1719
6FYX|1|2|A|1720
6FYX|1|2|U|1721
6FYX|1|2|C|1722
6FYX|1|2|U|1723
6FYX|1|2|G|1724

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8