IL_6FYX_109
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6FYX|1|2|U|793, 6FYX|1|2|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYX_109 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.3754
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.5
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6FYX|1|2|G|751
6FYX|1|2|A|752
6FYX|1|2|A|753
6FYX|1|2|A|754
6FYX|1|2|A|755
6FYX|1|2|A|756
6FYX|1|2|A|757
6FYX|1|2|U|758
6FYX|1|2|U|759
*
6FYX|1|2|A|790
6FYX|1|2|U|791
6FYX|1|2|A|792
6FYX|1|2|U|793
6FYX|1|2|U|794
6FYX|1|2|A|795
6FYX|1|2|G|796
6FYX|1|2|C|797
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain J
- KLLA0E23673p
- Chain L
- KLLA0A10483p
- Chain W
- 40S ribosomal protein S22
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