IL_6FYY_021

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6FYY|1|2|U|319, 6FYY|1|2|C|320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_021 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2277

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6FYY|1|2|U|317
6FYY|1|2|U|318
6FYY|1|2|U|319
6FYY|1|2|C|320
6FYY|1|2|G|321
6FYY|1|2|A|322
*
6FYY|1|2|U|344
6FYY|1|2|G|345

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p

Chain q

eIF3c,Eukaryotic translation initiation factor 3 subunit C