IL_6FYY_027
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UC*GGA
- Length
- 5 nucleotides
- Bulged bases
- 6FYY|1|2|G|458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_027 not in the Motif Atlas
- Geometric match to IL_5J7L_019
- Geometric discrepancy: 0.3019
- The information below is about IL_5J7L_019
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
6FYY|1|2|U|446
6FYY|1|2|C|447
*
6FYY|1|2|G|457
6FYY|1|2|G|458
6FYY|1|2|A|459
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain J
- KLLA0E23673p
- Chain Y
- 40S ribosomal protein S24
Coloring options: