IL_6FYY_029
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GAG*CGAGGAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_029 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.2114
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6FYY|1|2|G|513
6FYY|1|2|A|514
6FYY|1|2|G|515
*
6FYY|1|2|C|535
6FYY|1|2|G|536
6FYY|1|2|A|537
6FYY|1|2|G|538
6FYY|1|2|G|539
6FYY|1|2|A|540
6FYY|1|2|A|541
6FYY|1|2|C|542
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- KLLA0E23673p
- Chain Y
- 40S ribosomal protein S24
- Chain e
- 40S ribosomal protein S30
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