IL_6FYY_030

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_030 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2396

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6FYY|1|2|U|516
6FYY|1|2|A|517
6FYY|1|2|C|518
6FYY|1|2|A|519
*
6FYY|1|2|U|531
6FYY|1|2|U|532
6FYY|1|2|A|533
6FYY|1|2|A|534

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24