IL_6FYY_038

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GCUAACCUGUA*UGCAGGCGAAC

Length

22 nucleotides

Bulged bases

6FYY|1|2|G|732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|G|703
6FYY|1|2|C|704
6FYY|1|2|U|705
6FYY|1|2|A|706
6FYY|1|2|A|707
6FYY|1|2|C|708
6FYY|1|2|C|709
6FYY|1|2|U|710
6FYY|1|2|G|711
6FYY|1|2|U|712
6FYY|1|2|A|713
*
6FYY|1|2|U|725
6FYY|1|2|G|726
6FYY|1|2|C|727
6FYY|1|2|A|728
6FYY|1|2|G|729
6FYY|1|2|G|730
6FYY|1|2|C|731
6FYY|1|2|G|732
6FYY|1|2|A|733
6FYY|1|2|A|734
6FYY|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6