IL_6FYY_047

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6FYY|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_047 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2511

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6FYY|1|2|U|892
6FYY|1|2|U|893
6FYY|1|2|G|894
6FYY|1|2|U|895
6FYY|1|2|C|896
6FYY|1|2|A|897
6FYY|1|2|G|898
*
6FYY|1|2|C|909
6FYY|1|2|U|910
6FYY|1|2|U|911
6FYY|1|2|G|912
6FYY|1|2|G|913
6FYY|1|2|A|914
6FYY|1|2|U|915
6FYY|1|2|U|916
6FYY|1|2|U|917
6FYY|1|2|A|918

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1

Chain O

40S ribosomal protein S14

Chain j

Eukaryotic translation initiation factor 2 subunit alpha