IL_6FYY_048

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AGGGGAUCGAAG*CGUAGUCUU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|A|982
6FYY|1|2|G|983
6FYY|1|2|G|984
6FYY|1|2|G|985
6FYY|1|2|G|986
6FYY|1|2|A|987
6FYY|1|2|U|988
6FYY|1|2|C|989
6FYY|1|2|G|990
6FYY|1|2|A|991
6FYY|1|2|A|992
6FYY|1|2|G|993
*
6FYY|1|2|C|1009
6FYY|1|2|G|1010
6FYY|1|2|U|1011
6FYY|1|2|A|1012
6FYY|1|2|G|1013
6FYY|1|2|U|1014
6FYY|1|2|C|1015
6FYY|1|2|U|1016
6FYY|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

KLLA0F18040p

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26

Chain m

Eukaryotic translation initiation factor 5