3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_058 not in the Motif Atlas
Homologous match to IL_4V88_445
Geometric discrepancy: 0.1418
The information below is about IL_4V88_445
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

6FYY|1|2|G|1177
6FYY|1|2|G|1178
*
6FYY|1|2|C|1457
6FYY|1|2|A|1458
6FYY|1|2|C|1459

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Transfer RNA; tRNA
Chain P
KLLA0F07843p
Chain S
KLLA0B01562p
Chain i
Eukaryotic translation initiation factor 1A
Chain l
Eukaryotic translation initiation factor 2 subunit beta

Coloring options:


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