IL_6FYY_066
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CCG*CA(2MG)G
- Length
- 7 nucleotides
- Bulged bases
- 6FYY|1|2|A|1425
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_066 not in the Motif Atlas
- Geometric match to IL_5TBW_079
- Geometric discrepancy: 0.1458
- The information below is about IL_5TBW_079
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6FYY|1|2|C|1278
6FYY|1|2|C|1279
6FYY|1|2|G|1280
*
6FYY|1|2|C|1424
6FYY|1|2|A|1425
6FYY|1|2|2MG|1426
6FYY|1|2|G|1427
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (31-MER)
- Chain C
- KLLA0F09812p
- Chain D
- KLLA0D08305p
- Chain Q
- 40S ribosomal protein S16
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain i
- Eukaryotic translation initiation factor 1A
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