3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
CUAC*GAG
Length
7 nucleotides
Bulged bases
6FYY|1|2|U|1339
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_069 not in the Motif Atlas
Homologous match to IL_4V88_455
Geometric discrepancy: 0.1605
The information below is about IL_4V88_455
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6FYY|1|2|C|1338
6FYY|1|2|U|1339
6FYY|1|2|A|1340
6FYY|1|2|C|1341
*
6FYY|1|2|G|1381
6FYY|1|2|A|1382
6FYY|1|2|G|1383

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain Q
40S ribosomal protein S16
Chain R
KLLA0B01474p
Chain U
KLLA0F25542p
Chain g
KLLA0E12277p

Coloring options:


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