IL_6FYY_069

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

6FYY|1|2|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_069 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1605

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FYY|1|2|C|1338
6FYY|1|2|U|1339
6FYY|1|2|A|1340
6FYY|1|2|C|1341
*
6FYY|1|2|G|1381
6FYY|1|2|A|1382
6FYY|1|2|G|1383

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain R

KLLA0B01474p

Chain U

KLLA0F25542p

Chain g

KLLA0E12277p