IL_6FYY_081
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UAC*GAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_081 not in the Motif Atlas
- Homologous match to IL_4V88_467
- Geometric discrepancy: 0.18
- The information below is about IL_4V88_467
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6FYY|1|2|U|1648
6FYY|1|2|A|1649
6FYY|1|2|C|1650
*
6FYY|1|2|G|1746
6FYY|1|2|A|1747
6FYY|1|2|A|1748
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain X
- KLLA0B11231p
- Chain h
- 60S ribosomal protein L41-A
- Chain m
- Eukaryotic translation initiation factor 5
Coloring options: