3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
UCAAA*(PSU)GACAA
Length
11 nucleotides
Bulged bases
6FYY|1|2|A|467
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_090 not in the Motif Atlas
Homologous match to IL_8P9A_375
Geometric discrepancy: 0.2545
The information below is about IL_8P9A_375
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_12697.1
Basepair signature
cWW-cWW-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

6FYY|1|2|U|37
6FYY|1|2|C|38
6FYY|1|2|A|39
6FYY|1|2|A|40
6FYY|1|2|A|41
*
6FYY|1|2|PSU|465
6FYY|1|2|G|466
6FYY|1|2|A|467
6FYY|1|2|C|468
6FYY|1|2|A|469
6FYY|1|2|A|470

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain E
40S ribosomal protein S4
Chain J
KLLA0E23673p
Chain Y
40S ribosomal protein S24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0882 s