IL_6FYY_090
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UCAAA*(PSU)GACAA
- Length
- 11 nucleotides
- Bulged bases
- 6FYY|1|2|A|467
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_090 not in the Motif Atlas
- Homologous match to IL_8P9A_375
- Geometric discrepancy: 0.2545
- The information below is about IL_8P9A_375
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12697.1
- Basepair signature
- cWW-cWW-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6FYY|1|2|U|37
6FYY|1|2|C|38
6FYY|1|2|A|39
6FYY|1|2|A|40
6FYY|1|2|A|41
*
6FYY|1|2|PSU|465
6FYY|1|2|G|466
6FYY|1|2|A|467
6FYY|1|2|C|468
6FYY|1|2|A|469
6FYY|1|2|A|470
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain J
- KLLA0E23673p
- Chain Y
- 40S ribosomal protein S24
Coloring options: