IL_6FYY_091
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UUA(PSU)UU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_091 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.2663
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29223.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6FYY|1|2|U|117
6FYY|1|2|U|118
6FYY|1|2|A|119
6FYY|1|2|PSU|120
6FYY|1|2|U|121
6FYY|1|2|U|122
*
6FYY|1|2|A|294
6FYY|1|2|U|295
6FYY|1|2|U|296
6FYY|1|2|C|297
6FYY|1|2|A|298
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S8
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