IL_6FYY_094

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

6FYY|1|2|G|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|A|1222
6FYY|1|2|A|1223
6FYY|1|2|U|1224
6FYY|1|2|A|1225
6FYY|1|2|A|1226
6FYY|1|2|G|1227
6FYY|1|2|G|1228
6FYY|1|2|A|1229
6FYY|1|2|U|1230
6FYY|1|2|U|1231
6FYY|1|2|G|1232
*
6FYY|1|2|C|1251
6FYY|1|2|U|1252
6FYY|1|2|U|1253
6FYY|1|2|G|1254
6FYY|1|2|A|1255
6FYY|1|2|U|1256
6FYY|1|2|U|1257
6FYY|1|2|U|1258
6FYY|1|2|U|1259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

KLLA0B08173p

Chain M

40S ribosomal protein S12

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a