IL_6FYY_102

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GUCCGGU*GUUUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|G|650
6FYY|1|2|U|651
6FYY|1|2|C|652
6FYY|1|2|C|653
6FYY|1|2|G|654
6FYY|1|2|G|655
6FYY|1|2|U|656
*
6FYY|1|2|G|677
6FYY|1|2|U|678
6FYY|1|2|U|679
6FYY|1|2|U|680
6FYY|1|2|U|681
6FYY|1|2|U|682
6FYY|1|2|C|683

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain p

Eukaryotic translation initiation factor 3 subunit B