IL_6G18_043

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6G18|1|2|G|807
6G18|1|2|A|808
6G18|1|2|A|809
6G18|1|2|A|810
6G18|1|2|A|811
6G18|1|2|A|812
6G18|1|2|A|813
6G18|1|2|U|814
6G18|1|2|U|815
6G18|1|2|A|816
*
6G18|1|2|U|848
6G18|1|2|A|849
6G18|1|2|C|850
6G18|1|2|C|851
6G18|1|2|G|852
6G18|1|2|C|853
6G18|1|2|A|854
6G18|1|2|G|855
6G18|1|2|C|856

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain L

40S ribosomal protein S11

Chain W

40S ribosomal protein S15a