IL_6G18_063

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAAUUUGACUCAACACGGGAAACCUCAC*GGCUG

Length

35 nucleotides

Bulged bases

6G18|1|2|C|1247, 6G18|1|2|U|1248, 6G18|1|2|A|1253, 6G18|1|2|G|1256, 6G18|1|2|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6G18|1|2|C|1237
6G18|1|2|U|1238
6G18|1|2|U|1239
6G18|1|2|A|1240
6G18|1|2|A|1241
6G18|1|2|U|1242
6G18|1|2|U|1243
6G18|1|2|U|1244
6G18|1|2|G|1245
6G18|1|2|A|1246
6G18|1|2|C|1247
6G18|1|2|U|1248
6G18|1|2|C|1249
6G18|1|2|A|1250
6G18|1|2|A|1251
6G18|1|2|C|1252
6G18|1|2|A|1253
6G18|1|2|C|1254
6G18|1|2|G|1255
6G18|1|2|G|1256
6G18|1|2|G|1257
6G18|1|2|A|1258
6G18|1|2|A|1259
6G18|1|2|A|1260
6G18|1|2|C|1261
6G18|1|2|C|1262
6G18|1|2|U|1263
6G18|1|2|C|1264
6G18|1|2|A|1265
6G18|1|2|C|1266
*
6G18|1|2|G|1516
6G18|1|2|G|1517
6G18|1|2|C|1518
6G18|1|2|U|1519
6G18|1|2|G|1520

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain v

Serine/threonine-protein kinase RIO2

Chain w

Bystin