IL_6G18_098

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6G18|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G18_098 not in the Motif Atlas

Geometric match to IL_4L8H_001

Geometric discrepancy: 0.3696

The information below is about IL_4L8H_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6G18|1|2|A|529
6G18|1|2|U|530
*
6G18|1|2|A|554
6G18|1|2|A|555
6G18|1|2|U|556

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain w

Bystin