IL_6G5H_031

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

6G5H|1|2|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_031 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3236

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6G5H|1|2|G|563
6G5H|1|2|A|564
6G5H|1|2|G|565
*
6G5H|1|2|C|585
6G5H|1|2|G|586
6G5H|1|2|A|587
6G5H|1|2|G|588
6G5H|1|2|G|589
6G5H|1|2|A|590
6G5H|1|2|U|591
6G5H|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30