IL_6G5H_037

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6G5H|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_037 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1508

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6G5H|1|2|G|665
6G5H|1|2|U|666
6G5H|1|2|U|667
6G5H|1|2|A|668
6G5H|1|2|A|669
6G5H|1|2|A|670
6G5H|1|2|A|671
*
6G5H|1|2|U|1161
6G5H|1|2|C|1162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain a

40S ribosomal protein S26