IL_6G5I_060

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6G5I|1|2|G|1207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5I_060 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.2683

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6G5I|1|2|G|1206
6G5I|1|2|G|1207
6G5I|1|2|A|1208
*
6G5I|1|2|U|1691
6G5I|1|2|U|1692

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain x

RNA-binding protein PNO1

Chain y

RNA-binding protein NOB1