IL_6GAW_003

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

6GAW|1|AA|A|45

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_003 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.2585

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

6GAW|1|AA|U|44
6GAW|1|AA|A|45
6GAW|1|AA|C|46
*
6GAW|1|AA|G|178
6GAW|1|AA|A|179

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain BC

Translation initiation factor IF-2, mitochondrial