IL_6GAW_005

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_005 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.1452

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

6GAW|1|AA|C|78
6GAW|1|AA|C|79
*
6GAW|1|AA|G|103
6GAW|1|AA|A|104
6GAW|1|AA|G|105

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AQ

uS17m

Chain Ac

Mitochondrial ribosomal protein S25

Chain Aj

28S ribosomal protein S34, mitochondrial